Those "fillers" and compounds don't adhere well to tar paper. If you've ever seen a tile setter do a "mud" job, they will first staple their paper down, then staple chicken wire or similar as reinforcement for their dry mix, which is a portland cement product. So, to answer your question, you can do what you propose, however, it will probably not adhere to the substrate. If you want to "screed" a filler across your low spots, consider ARDEX Feather finish, which is made for your situation. I believe one needs to apply a sealer/bonding agent first when going over wood substrates. Check with a local flooring material supplier (distributor, not reatailer) for supplies. No tar paper needed with ARDEX.
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