Same staples... two different lengths. It is never recommended to fasten the butt end tongue. You are supposed to stay off the board ends by at least two inches anyway.
Invariably you will find some places of the 1/2" CDX that will swag or dip between the joist. There i would back off a little more on the ends to let it bridge and not telegraph up. I keep small pieces of 30 lb felt to insert there as I go along.
And yeah, doing that is very time consuming , but I find it necessary to do installing prefinished flooring. Can you tell I am anal?