When T&G floors become thin from sanding the top part of the groove gets weak and can splinter. If you like to keep the old floor I recommend installing a thin piece of blocking, one half inch thick plywood cut into 2 inch wide strips, glued between the floor joists to make the flooring move in unison so no more splintering happens. If it has already started, then it is important to do this if the underside of the flooring is still exposed, otherwise with normal traffic it will spread. Splinters can be dangerous. After the blocking has been done epoxy/wood flour can be used for a filler, or sometimes just wood putty, since the boards don't move enough for it to pop out after it gets hard. You will need to get sheets of brass at the doorways fastened with screws or use construction adhesive with weight on it till the glue dries where the floor is splintering instead of trying to make it flush.
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